J5_8UD8_006
3D structure
- PDB id
- 8UD8 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of the A2503-C2,C8-dimethylated Thermus thermophilus 70S ribosome in complex with cresomycin, mRNA, deacylated A-site tRNAphe, aminoacylated P-site fMet-tRNAmet, and deacylated E-site tRNAphe at 2.70A resolution
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 2.6 Å
Loop
- Sequence
- AAAAGACC*GGAUAACA*UCG(8AH)UGUC*GGUUCAG*CGGUCU
- Length
- 37 nucleotides
- Bulged bases
- 8UD8|1|1A|A|2062, 8UD8|1|1A|A|2448, 8UD8|1|1A|U|2449, 8UD8|1|1A|U|2609
- QA status
- Modified nucleotides: 8AH
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
8UD8|1|1A|A|2057
8UD8|1|1A|A|2058
8UD8|1|1A|A|2059
8UD8|1|1A|A|2060
8UD8|1|1A|G|2061
8UD8|1|1A|A|2062
8UD8|1|1A|C|2063
8UD8|1|1A|C|2064
*
8UD8|1|1A|G|2446
8UD8|1|1A|G|2447
8UD8|1|1A|A|2448
8UD8|1|1A|U|2449
8UD8|1|1A|A|2450
8UD8|1|1A|A|2451
8UD8|1|1A|C|2452
8UD8|1|1A|A|2453
*
8UD8|1|1A|U|2500
8UD8|1|1A|C|2501
8UD8|1|1A|G|2502
8UD8|1|1A|8AH|2503
8UD8|1|1A|U|2504
8UD8|1|1A|G|2505
8UD8|1|1A|U|2506
8UD8|1|1A|C|2507
*
8UD8|1|1A|G|2582
8UD8|1|1A|G|2583
8UD8|1|1A|U|2584
8UD8|1|1A|U|2585
8UD8|1|1A|C|2586
8UD8|1|1A|A|2587
8UD8|1|1A|G|2588
*
8UD8|1|1A|C|2606
8UD8|1|1A|G|2607
8UD8|1|1A|G|2608
8UD8|1|1A|U|2609
8UD8|1|1A|C|2610
8UD8|1|1A|U|2611
Current chains
- Chain 1A
- 23S Ribosomal RNA
Nearby chains
- Chain 10
- 50S ribosomal protein L27
- Chain 15
- 50S ribosomal protein L32
- Chain 1D
- 50S ribosomal protein L2
- Chain 1E
- 50S ribosomal protein L3
- Chain 1F
- 50S ribosomal protein L4
- Chain 1P
- 50S ribosomal protein L15
- Chain 1Q
- 50S ribosomal protein L16
- Chain 1W
- 50S ribosomal protein L22
- Chain 1w
- Transfer RNA; tRNA
- Chain 1x
- Transfer RNA; tRNA
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