J5_8UD8_014

3D structure

PDB id

8UD8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the A2503-C2,C8-dimethylated Thermus thermophilus 70S ribosome in complex with cresomycin, mRNA, deacylated A-site tRNAphe, aminoacylated P-site fMet-tRNAmet, and deacylated E-site tRNAphe at 2.70A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.6 Å

Loop

Sequence

CGAG*CGUAG*CGAG*CGCAAG*CAAAG

Length

24 nucleotides

Bulged bases

8UD8|1|2A|A|652|||B

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8UD8|1|2A|C|601
8UD8|1|2A|G|602
8UD8|1|2A|A|603
8UD8|1|2A|G|604
*
8UD8|1|2A|C|624
8UD8|1|2A|G|625
8UD8|1|2A|U|626
8UD8|1|2A|A|627
8UD8|1|2A|G|628
*
8UD8|1|2A|C|635
8UD8|1|2A|G|636
8UD8|1|2A|A|637
8UD8|1|2A|G|638
*
8UD8|1|2A|C|650
8UD8|1|2A|G|651
8UD8|1|2A|C|652
8UD8|1|2A|A|652|||A
8UD8|1|2A|A|652|||B
8UD8|1|2A|G|652|||C
*
8UD8|1|2A|C|652|||V
8UD8|1|2A|A|653
8UD8|1|2A|A|654
8UD8|1|2A|A|655
8UD8|1|2A|G|656

Current chains

Chain 2A

23S Ribosomal RNA

Nearby chains

Chain 28

50S ribosomal protein L35

Chain 2F

50S ribosomal protein L4

Chain 2P

50S ribosomal protein L15