J5_8UIY_004
3D structure
- PDB id
- 8UIY (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- In situ human P-Z state 80S ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.44 Å
Loop
- Sequence
- AAGAAGACC*GGAUAACUG*CUUCGAUGUC*GGUUUAG*UAGUUUU
- Length
- 42 nucleotides
- Bulged bases
- 8UIY|1|L5|A|3908, 8UIY|1|L5|A|4394, 8UIY|1|L5|U|4450, 8UIY|1|L5|G|4451, 8UIY|1|L5|U|4555, 8UIY|1|L5|U|4556
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
8UIY|1|L5|A|3902
8UIY|1|L5|A|3903
8UIY|1|L5|G|3904
8UIY|1|L5|A|3905
8UIY|1|L5|A|3906
8UIY|1|L5|G|3907
8UIY|1|L5|A|3908
8UIY|1|L5|C|3909
8UIY|1|L5|C|3910
*
8UIY|1|L5|G|4392
8UIY|1|L5|G|4393
8UIY|1|L5|A|4394
8UIY|1|L5|U|4395
8UIY|1|L5|A|4396
8UIY|1|L5|A|4397
8UIY|1|L5|C|4398
8UIY|1|L5|U|4399
8UIY|1|L5|G|4400
*
8UIY|1|L5|C|4444
8UIY|1|L5|U|4445
8UIY|1|L5|U|4446
8UIY|1|L5|C|4447
8UIY|1|L5|G|4448
8UIY|1|L5|A|4449
8UIY|1|L5|U|4450
8UIY|1|L5|G|4451
8UIY|1|L5|U|4452
8UIY|1|L5|C|4453
*
8UIY|1|L5|G|4528
8UIY|1|L5|G|4529
8UIY|1|L5|U|4530
8UIY|1|L5|U|4531
8UIY|1|L5|U|4532
8UIY|1|L5|A|4533
8UIY|1|L5|G|4534
*
8UIY|1|L5|U|4552
8UIY|1|L5|A|4553
8UIY|1|L5|G|4554
8UIY|1|L5|U|4555
8UIY|1|L5|U|4556
8UIY|1|L5|U|4557
8UIY|1|L5|U|4558
Current chains
- Chain L5
- 28S rRNA
Nearby chains
- Chain LA
- 60S ribosomal protein L8
- Chain LB
- Large ribosomal subunit protein uL3
- Chain LC
- 60S ribosomal protein L4
- Chain LP
- 60S ribosomal protein L17
- Chain Lb
- Large ribosomal subunit protein eL29
- Chain Pt
- Transfer RNA; tRNA
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