3D structure

PDB id
8UIZ (explore in PDB, NAKB, or RNA 3D Hub)
Description
In situ human P-E state 80S ribosome
Experimental method
ELECTRON MICROSCOPY
Resolution
3.43 Å

Loop

Sequence
GCAAGCCGG*UG*UG*CGGACCAGG*CAC
Length
25 nucleotides
Bulged bases
8UIZ|1|L5|G|3620, 8UIZ|1|L5|G|3625
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J5_8UIZ_003 not in the Motif Atlas
Homologous match to J5_8CRE_004
Geometric discrepancy: 0.0882
The information below is about J5_8CRE_004
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J5_62523.6
Basepair signature
cWW-F-F-F-cWW-F-F-F-F-F-F-F-F-F-cWW-F-cWW-cWW
Number of instances in this motif group
7

Unit IDs

8UIZ|1|L5|G|2855
8UIZ|1|L5|C|2856
8UIZ|1|L5|A|2857
8UIZ|1|L5|A|2858
8UIZ|1|L5|G|2859
8UIZ|1|L5|C|2860
8UIZ|1|L5|C|2861
8UIZ|1|L5|G|2862
8UIZ|1|L5|G|2863
*
8UIZ|1|L5|U|2887
8UIZ|1|L5|G|2888
*
8UIZ|1|L5|U|3613
8UIZ|1|L5|G|3614
*
8UIZ|1|L5|C|3618
8UIZ|1|L5|G|3619
8UIZ|1|L5|G|3620
8UIZ|1|L5|A|3621
8UIZ|1|L5|C|3622
8UIZ|1|L5|C|3623
8UIZ|1|L5|A|3624
8UIZ|1|L5|G|3625
8UIZ|1|L5|G|3626
*
8UIZ|1|L5|C|3835
8UIZ|1|L5|A|3836
8UIZ|1|L5|C|3837

Current chains

Chain L5
28S rRNA

Nearby chains

Chain LB
Large ribosomal subunit protein uL3
Chain LR
60S ribosomal protein L19
Chain LV
60S ribosomal protein L23
Chain LW
Ribosomal protein L24
Chain S2
Small subunit ribosomal RNA; SSU rRNA

Coloring options:


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