3D structure

PDB id
8UIZ (explore in PDB, NAKB, or RNA 3D Hub)
Description
In situ human P-E state 80S ribosome
Experimental method
ELECTRON MICROSCOPY
Resolution
3.43 Å

Loop

Sequence
AAGAAGACC*GGAUAACUG*CUUCGAUGUC*GGUUUAG*UAGUUUU
Length
42 nucleotides
Bulged bases
8UIZ|1|L5|A|3908, 8UIZ|1|L5|A|4394, 8UIZ|1|L5|G|4451, 8UIZ|1|L5|U|4555, 8UIZ|1|L5|U|4556
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
Not in a motif group
Basepair signature
Not available
Number of instances in this motif group
0

Unit IDs

8UIZ|1|L5|A|3902
8UIZ|1|L5|A|3903
8UIZ|1|L5|G|3904
8UIZ|1|L5|A|3905
8UIZ|1|L5|A|3906
8UIZ|1|L5|G|3907
8UIZ|1|L5|A|3908
8UIZ|1|L5|C|3909
8UIZ|1|L5|C|3910
*
8UIZ|1|L5|G|4392
8UIZ|1|L5|G|4393
8UIZ|1|L5|A|4394
8UIZ|1|L5|U|4395
8UIZ|1|L5|A|4396
8UIZ|1|L5|A|4397
8UIZ|1|L5|C|4398
8UIZ|1|L5|U|4399
8UIZ|1|L5|G|4400
*
8UIZ|1|L5|C|4444
8UIZ|1|L5|U|4445
8UIZ|1|L5|U|4446
8UIZ|1|L5|C|4447
8UIZ|1|L5|G|4448
8UIZ|1|L5|A|4449
8UIZ|1|L5|U|4450
8UIZ|1|L5|G|4451
8UIZ|1|L5|U|4452
8UIZ|1|L5|C|4453
*
8UIZ|1|L5|G|4528
8UIZ|1|L5|G|4529
8UIZ|1|L5|U|4530
8UIZ|1|L5|U|4531
8UIZ|1|L5|U|4532
8UIZ|1|L5|A|4533
8UIZ|1|L5|G|4534
*
8UIZ|1|L5|U|4552
8UIZ|1|L5|A|4553
8UIZ|1|L5|G|4554
8UIZ|1|L5|U|4555
8UIZ|1|L5|U|4556
8UIZ|1|L5|U|4557
8UIZ|1|L5|U|4558

Current chains

Chain L5
28S rRNA

Nearby chains

Chain LA
60S ribosomal protein L8
Chain LB
Large ribosomal subunit protein uL3
Chain LC
60S ribosomal protein L4
Chain Lb
Large ribosomal subunit protein eL29
Chain Pt
Transfer RNA; tRNA

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