3D structure

PDB id
8UIZ (explore in PDB, NAKB, or RNA 3D Hub)
Description
In situ human P-E state 80S ribosome
Experimental method
ELECTRON MICROSCOPY
Resolution
3.43 Å

Loop

Sequence
CUUGU*AAAUAAC*GGAAUGAG*CGAGGAUCCAU*AUAG
Length
35 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
Not in a motif group
Basepair signature
Not available
Number of instances in this motif group
0

Unit IDs

8UIZ|1|S2|C|30
8UIZ|1|S2|U|31
8UIZ|1|S2|U|32
8UIZ|1|S2|G|33
8UIZ|1|S2|U|34
*
8UIZ|1|S2|A|521
8UIZ|1|S2|A|522
8UIZ|1|S2|A|523
8UIZ|1|S2|U|524
8UIZ|1|S2|A|525
8UIZ|1|S2|A|526
8UIZ|1|S2|C|527
*
8UIZ|1|S2|G|558
8UIZ|1|S2|G|559
8UIZ|1|S2|A|560
8UIZ|1|S2|A|561
8UIZ|1|S2|U|562
8UIZ|1|S2|G|563
8UIZ|1|S2|A|564
8UIZ|1|S2|G|565
*
8UIZ|1|S2|C|585
8UIZ|1|S2|G|586
8UIZ|1|S2|A|587
8UIZ|1|S2|G|588
8UIZ|1|S2|G|589
8UIZ|1|S2|A|590
8UIZ|1|S2|U|591
8UIZ|1|S2|C|592
8UIZ|1|S2|C|593
8UIZ|1|S2|A|594
8UIZ|1|S2|U|595
*
8UIZ|1|S2|A|641
8UIZ|1|S2|U|642
8UIZ|1|S2|A|643
8UIZ|1|S2|G|644

Current chains

Chain S2
18S rRNA [Homo sapiens]

Nearby chains

Chain SJ
40S ribosomal protein S9
Chain SX
40S ribosomal protein S23
Chain Se
Small ribosomal subunit protein eS30

Coloring options:

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