3D structure

PDB id
8UJ9 (explore in PDB, NAKB, or RNA 3D Hub)
Description
In situ human P state 80S ribosome
Experimental method
ELECTRON MICROSCOPY
Resolution
3.64 Å

Loop

Sequence
GCAAGCCGG*UG*UG*CGGACCAGG*CAC
Length
25 nucleotides
Bulged bases
8UJ9|1|L5|G|3620, 8UJ9|1|L5|G|3625
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J5_8UJ9_003 not in the Motif Atlas
Homologous match to J5_8CRE_004
Geometric discrepancy: 0.0987
The information below is about J5_8CRE_004
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J5_62523.6
Basepair signature
cWW-F-F-F-cWW-F-F-F-F-F-F-F-F-F-cWW-F-cWW-cWW
Number of instances in this motif group
7

Unit IDs

8UJ9|1|L5|G|2855
8UJ9|1|L5|C|2856
8UJ9|1|L5|A|2857
8UJ9|1|L5|A|2858
8UJ9|1|L5|G|2859
8UJ9|1|L5|C|2860
8UJ9|1|L5|C|2861
8UJ9|1|L5|G|2862
8UJ9|1|L5|G|2863
*
8UJ9|1|L5|U|2887
8UJ9|1|L5|G|2888
*
8UJ9|1|L5|U|3613
8UJ9|1|L5|G|3614
*
8UJ9|1|L5|C|3618
8UJ9|1|L5|G|3619
8UJ9|1|L5|G|3620
8UJ9|1|L5|A|3621
8UJ9|1|L5|C|3622
8UJ9|1|L5|C|3623
8UJ9|1|L5|A|3624
8UJ9|1|L5|G|3625
8UJ9|1|L5|G|3626
*
8UJ9|1|L5|C|3835
8UJ9|1|L5|A|3836
8UJ9|1|L5|C|3837

Current chains

Chain L5
28S rRNA [Homo sapiens]

Nearby chains

Chain LB
Large ribosomal subunit protein uL3
Chain LR
60S ribosomal protein L19
Chain LV
60S ribosomal protein L23
Chain LW
Ribosomal protein L24
Chain S2
Small subunit ribosomal RNA; SSU rRNA

Coloring options:


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