J5_8UJ9_005
3D structure
- PDB id
- 8UJ9 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- In situ human P state 80S ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.64 Å
Loop
- Sequence
- AAGAAGACC*GGAUAACUG*CUUCGAUGUC*GGUUUAG*UAGUUUU
- Length
- 42 nucleotides
- Bulged bases
- 8UJ9|1|L5|A|3908, 8UJ9|1|L5|A|4394, 8UJ9|1|L5|G|4451, 8UJ9|1|L5|U|4555, 8UJ9|1|L5|U|4556
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
8UJ9|1|L5|A|3902
8UJ9|1|L5|A|3903
8UJ9|1|L5|G|3904
8UJ9|1|L5|A|3905
8UJ9|1|L5|A|3906
8UJ9|1|L5|G|3907
8UJ9|1|L5|A|3908
8UJ9|1|L5|C|3909
8UJ9|1|L5|C|3910
*
8UJ9|1|L5|G|4392
8UJ9|1|L5|G|4393
8UJ9|1|L5|A|4394
8UJ9|1|L5|U|4395
8UJ9|1|L5|A|4396
8UJ9|1|L5|A|4397
8UJ9|1|L5|C|4398
8UJ9|1|L5|U|4399
8UJ9|1|L5|G|4400
*
8UJ9|1|L5|C|4444
8UJ9|1|L5|U|4445
8UJ9|1|L5|U|4446
8UJ9|1|L5|C|4447
8UJ9|1|L5|G|4448
8UJ9|1|L5|A|4449
8UJ9|1|L5|U|4450
8UJ9|1|L5|G|4451
8UJ9|1|L5|U|4452
8UJ9|1|L5|C|4453
*
8UJ9|1|L5|G|4528
8UJ9|1|L5|G|4529
8UJ9|1|L5|U|4530
8UJ9|1|L5|U|4531
8UJ9|1|L5|U|4532
8UJ9|1|L5|A|4533
8UJ9|1|L5|G|4534
*
8UJ9|1|L5|U|4552
8UJ9|1|L5|A|4553
8UJ9|1|L5|G|4554
8UJ9|1|L5|U|4555
8UJ9|1|L5|U|4556
8UJ9|1|L5|U|4557
8UJ9|1|L5|U|4558
Current chains
- Chain L5
- 28S rRNA [Homo sapiens]
Nearby chains
- Chain LA
- 60S ribosomal protein L8
- Chain LB
- Large ribosomal subunit protein uL3
- Chain LC
- 60S ribosomal protein L4
- Chain La
- 60S ribosomal protein L27a
- Chain Lb
- Large ribosomal subunit protein eL29
- Chain Pt
- Transfer RNA; tRNA
Coloring options: