3D structure

PDB id
8UJ9 (explore in PDB, NAKB, or RNA 3D Hub)
Description
In situ human P state 80S ribosome
Experimental method
ELECTRON MICROSCOPY
Resolution
3.64 Å

Loop

Sequence
CUUGU*AAAUAAC*GGAAUGAG*CGAGGAUCCAU*AUAG
Length
35 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
Not in a motif group
Basepair signature
Not available
Number of instances in this motif group
0

Unit IDs

8UJ9|1|S2|C|30
8UJ9|1|S2|U|31
8UJ9|1|S2|U|32
8UJ9|1|S2|G|33
8UJ9|1|S2|U|34
*
8UJ9|1|S2|A|521
8UJ9|1|S2|A|522
8UJ9|1|S2|A|523
8UJ9|1|S2|U|524
8UJ9|1|S2|A|525
8UJ9|1|S2|A|526
8UJ9|1|S2|C|527
*
8UJ9|1|S2|G|558
8UJ9|1|S2|G|559
8UJ9|1|S2|A|560
8UJ9|1|S2|A|561
8UJ9|1|S2|U|562
8UJ9|1|S2|G|563
8UJ9|1|S2|A|564
8UJ9|1|S2|G|565
*
8UJ9|1|S2|C|585
8UJ9|1|S2|G|586
8UJ9|1|S2|A|587
8UJ9|1|S2|G|588
8UJ9|1|S2|G|589
8UJ9|1|S2|A|590
8UJ9|1|S2|U|591
8UJ9|1|S2|C|592
8UJ9|1|S2|C|593
8UJ9|1|S2|A|594
8UJ9|1|S2|U|595
*
8UJ9|1|S2|A|641
8UJ9|1|S2|U|642
8UJ9|1|S2|A|643
8UJ9|1|S2|G|644

Current chains

Chain S2
18S rRNA [Homo sapiens]

Nearby chains

Chain SJ
40S ribosomal protein S9
Chain SX
40S ribosomal protein S23
Chain Se
Small ribosomal subunit protein eS30

Coloring options:

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