J5_8UJB_002
3D structure
- PDB id
- 8UJB (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- In situ human 80S ribosome with EBP1 (consensus map)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.67 Å
Loop
- Sequence
- GGAGUC*GGAC*GUUC*GCC*GCAGAUC
- Length
- 24 nucleotides
- Bulged bases
- 8UJB|1|L5|C|2289, 8UJB|1|L5|U|2350
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J5_8UJB_002 not in the Motif Atlas
- Homologous match to J5_8P9A_011
- Geometric discrepancy: 0.0564
- The information below is about J5_8P9A_011
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J5_08384.1
- Basepair signature
- cWW-tSH-tSS-tHW-F-cWS-F-tWS-cWW-cWW-F-cWW-cWW-F
- Number of instances in this motif group
- 4
Unit IDs
8UJB|1|L5|G|1335
8UJB|1|L5|G|1336
8UJB|1|L5|A|1337
8UJB|1|L5|G|1338
8UJB|1|L5|U|1339
8UJB|1|L5|C|1340
*
8UJB|1|L5|G|1516
8UJB|1|L5|G|1517
8UJB|1|L5|A|1518
8UJB|1|L5|C|1519
*
8UJB|1|L5|G|1658
8UJB|1|L5|U|1659
8UJB|1|L5|U|1660
8UJB|1|L5|C|1661
*
8UJB|1|L5|G|2288
8UJB|1|L5|C|2289
8UJB|1|L5|C|2290
*
8UJB|1|L5|G|2345
8UJB|1|L5|C|2346
8UJB|1|L5|A|2347
8UJB|1|L5|G|2348
8UJB|1|L5|A|2349
8UJB|1|L5|U|2350
8UJB|1|L5|C|2351
Current chains
- Chain L5
- 28S rRNA
Nearby chains
- Chain L8
- 5.8S ribosomal RNA; 5.8S rRNA
- Chain LC
- 60S ribosomal protein L4
- Chain LL
- Large ribosomal subunit protein eL13
- Chain LN
- 60S ribosomal protein L15
- Chain La
- 60S ribosomal protein L27a
- Chain Le
- 60S ribosomal protein L32
- Chain Lr
- 60S ribosomal protein L28
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