J5_8UJB_003
3D structure
- PDB id
- 8UJB (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- In situ human 80S ribosome with EBP1 (consensus map)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.67 Å
Loop
- Sequence
- GCAAGCCGG*UG*UG*CGGACCAGG*CAC
- Length
- 25 nucleotides
- Bulged bases
- 8UJB|1|L5|G|3620, 8UJB|1|L5|G|3625
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J5_8UJB_003 not in the Motif Atlas
- Homologous match to J5_8CRE_004
- Geometric discrepancy: 0.0866
- The information below is about J5_8CRE_004
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J5_62523.6
- Basepair signature
- cWW-F-F-F-cWW-F-F-F-F-F-F-F-F-F-cWW-F-cWW-cWW
- Number of instances in this motif group
- 7
Unit IDs
8UJB|1|L5|G|2855
8UJB|1|L5|C|2856
8UJB|1|L5|A|2857
8UJB|1|L5|A|2858
8UJB|1|L5|G|2859
8UJB|1|L5|C|2860
8UJB|1|L5|C|2861
8UJB|1|L5|G|2862
8UJB|1|L5|G|2863
*
8UJB|1|L5|U|2887
8UJB|1|L5|G|2888
*
8UJB|1|L5|U|3613
8UJB|1|L5|G|3614
*
8UJB|1|L5|C|3618
8UJB|1|L5|G|3619
8UJB|1|L5|G|3620
8UJB|1|L5|A|3621
8UJB|1|L5|C|3622
8UJB|1|L5|C|3623
8UJB|1|L5|A|3624
8UJB|1|L5|G|3625
8UJB|1|L5|G|3626
*
8UJB|1|L5|C|3835
8UJB|1|L5|A|3836
8UJB|1|L5|C|3837
Current chains
- Chain L5
- 28S rRNA
Nearby chains
- Chain LB
- Large ribosomal subunit protein uL3
- Chain LR
- 60S ribosomal protein L19
- Chain LV
- 60S ribosomal protein L23
- Chain LW
- Ribosomal protein L24
- Chain S2
- Small subunit ribosomal RNA; SSU rRNA
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