J5_8UJC_005
3D structure
- PDB id
- 8UJC (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- In situ human 60S ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.87 Å
Loop
- Sequence
- AAGAAGACC*GGAUAACUG*CUUCGAUGUC*GGUUUAG*UAGUUUU
- Length
- 42 nucleotides
- Bulged bases
- 8UJC|1|L5|A|3908, 8UJC|1|L5|A|4394, 8UJC|1|L5|G|4451, 8UJC|1|L5|U|4555, 8UJC|1|L5|U|4556
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
8UJC|1|L5|A|3902
8UJC|1|L5|A|3903
8UJC|1|L5|G|3904
8UJC|1|L5|A|3905
8UJC|1|L5|A|3906
8UJC|1|L5|G|3907
8UJC|1|L5|A|3908
8UJC|1|L5|C|3909
8UJC|1|L5|C|3910
*
8UJC|1|L5|G|4392
8UJC|1|L5|G|4393
8UJC|1|L5|A|4394
8UJC|1|L5|U|4395
8UJC|1|L5|A|4396
8UJC|1|L5|A|4397
8UJC|1|L5|C|4398
8UJC|1|L5|U|4399
8UJC|1|L5|G|4400
*
8UJC|1|L5|C|4444
8UJC|1|L5|U|4445
8UJC|1|L5|U|4446
8UJC|1|L5|C|4447
8UJC|1|L5|G|4448
8UJC|1|L5|A|4449
8UJC|1|L5|U|4450
8UJC|1|L5|G|4451
8UJC|1|L5|U|4452
8UJC|1|L5|C|4453
*
8UJC|1|L5|G|4528
8UJC|1|L5|G|4529
8UJC|1|L5|U|4530
8UJC|1|L5|U|4531
8UJC|1|L5|U|4532
8UJC|1|L5|A|4533
8UJC|1|L5|G|4534
*
8UJC|1|L5|U|4552
8UJC|1|L5|A|4553
8UJC|1|L5|G|4554
8UJC|1|L5|U|4555
8UJC|1|L5|U|4556
8UJC|1|L5|U|4557
8UJC|1|L5|U|4558
Current chains
- Chain L5
- 28S rRNA
Nearby chains
- Chain LA
- 60S ribosomal protein L8
- Chain LB
- Large ribosomal subunit protein uL3
- Chain LC
- 60S ribosomal protein L4
- Chain La
- 60S ribosomal protein L27a
- Chain Lb
- Large ribosomal subunit protein eL29
Coloring options: