J5_8UJD_003
3D structure
- PDB id
- 8UJD (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- In situ human 60S ribosome with eIF6
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.96 Å
Loop
- Sequence
- GCAAGCCGG*UG*UG*CGGACCAGG*CAC
- Length
- 25 nucleotides
- Bulged bases
- 8UJD|1|L5|G|3620, 8UJD|1|L5|G|3625
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J5_8UJD_003 not in the Motif Atlas
- Homologous match to J5_8CRE_004
- Geometric discrepancy: 0.0936
- The information below is about J5_8CRE_004
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J5_62523.6
- Basepair signature
- cWW-F-F-F-cWW-F-F-F-F-F-F-F-F-F-cWW-F-cWW-cWW
- Number of instances in this motif group
- 7
Unit IDs
8UJD|1|L5|G|2855
8UJD|1|L5|C|2856
8UJD|1|L5|A|2857
8UJD|1|L5|A|2858
8UJD|1|L5|G|2859
8UJD|1|L5|C|2860
8UJD|1|L5|C|2861
8UJD|1|L5|G|2862
8UJD|1|L5|G|2863
*
8UJD|1|L5|U|2887
8UJD|1|L5|G|2888
*
8UJD|1|L5|U|3613
8UJD|1|L5|G|3614
*
8UJD|1|L5|C|3618
8UJD|1|L5|G|3619
8UJD|1|L5|G|3620
8UJD|1|L5|A|3621
8UJD|1|L5|C|3622
8UJD|1|L5|C|3623
8UJD|1|L5|A|3624
8UJD|1|L5|G|3625
8UJD|1|L5|G|3626
*
8UJD|1|L5|C|3835
8UJD|1|L5|A|3836
8UJD|1|L5|C|3837
Current chains
- Chain L5
- 28S rRNA
Nearby chains
- Chain LB
- Large ribosomal subunit protein uL3
- Chain LR
- 60S ribosomal protein L19
- Chain LV
- 60S ribosomal protein L23
- Chain LW
- Ribosomal protein L24
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