J5_8UJD_004

3D structure

PDB id

8UJD (explore in PDB, NAKB, or RNA 3D Hub)

Description

In situ human 60S ribosome with eIF6

Experimental method

ELECTRON MICROSCOPY

Resolution

2.96 Å

Loop

Sequence

CUG*CG*CUU*AGGUAG*UGAAUG

Length

20 nucleotides

Bulged bases

8UJD|1|L5|U|3818

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8UJD|1|L5|C|3696
8UJD|1|L5|U|3697
8UJD|1|L5|G|3698
*
8UJD|1|L5|C|3752
8UJD|1|L5|G|3753
*
8UJD|1|L5|C|3771
8UJD|1|L5|U|3772
8UJD|1|L5|U|3773
*
8UJD|1|L5|A|3775
8UJD|1|L5|G|3776
8UJD|1|L5|G|3777
8UJD|1|L5|U|3778
8UJD|1|L5|A|3779
8UJD|1|L5|G|3780
*
8UJD|1|L5|U|3814
8UJD|1|L5|G|3815
8UJD|1|L5|A|3816
8UJD|1|L5|A|3817
8UJD|1|L5|U|3818
8UJD|1|L5|G|3819

Current chains

Chain L5

28S rRNA

Nearby chains

Chain LA

60S ribosomal protein L8