Loop J5_8UJD

3D structure

PDB id: 8UJD (explore in PDB, NAKB, or RNA 3D Hub)
Description: In situ human 60S ribosome with eIF6
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.96 Å

Loop

Sequence: AAGAAGACC*GGAUAACUG*CUUCGAUGUC*GGUUUAG*UAGUUUU
Length: 42 nucleotides
Bulged bases: 8UJD|1|L5|A|3908, 8UJD|1|L5|A|4394, 8UJD|1|L5|G|4451, 8UJD|1|L5|U|4452, 8UJD|1|L5|U|4555, 8UJD|1|L5|U|4556
QA status: Valid loop

Sequence variability

R3DSVS

Structural variability across Equivalence Class

R3DMCS EC

Structural variability across Rfam

R3DMCS Rfam

Detailed Annotation: No text annotation
Broad Annotation: No text annotation
Motif group: Not in a motif group
Basepair signature: Not available
Number of instances in this motif group: 0

Unit IDs

8UJD|1|L5|A|3902
8UJD|1|L5|A|3903
8UJD|1|L5|G|3904
8UJD|1|L5|A|3905
8UJD|1|L5|A|3906
8UJD|1|L5|G|3907
8UJD|1|L5|A|3908
8UJD|1|L5|C|3909
8UJD|1|L5|C|3910
*
8UJD|1|L5|G|4392
8UJD|1|L5|G|4393
8UJD|1|L5|A|4394
8UJD|1|L5|U|4395
8UJD|1|L5|A|4396
8UJD|1|L5|A|4397
8UJD|1|L5|C|4398
8UJD|1|L5|U|4399
8UJD|1|L5|G|4400
*
8UJD|1|L5|C|4444
8UJD|1|L5|U|4445
8UJD|1|L5|U|4446
8UJD|1|L5|C|4447
8UJD|1|L5|G|4448
8UJD|1|L5|A|4449
8UJD|1|L5|U|4450
8UJD|1|L5|G|4451
8UJD|1|L5|U|4452
8UJD|1|L5|C|4453
*
8UJD|1|L5|G|4528
8UJD|1|L5|G|4529
8UJD|1|L5|U|4530
8UJD|1|L5|U|4531
8UJD|1|L5|U|4532
8UJD|1|L5|A|4533
8UJD|1|L5|G|4534
*
8UJD|1|L5|U|4552
8UJD|1|L5|A|4553
8UJD|1|L5|G|4554
8UJD|1|L5|U|4555
8UJD|1|L5|U|4556
8UJD|1|L5|U|4557
8UJD|1|L5|U|4558

Current chains

Chain L5: 28S rRNA

Nearby chains

Chain LA: 60S ribosomal protein L8
Chain LB: Large ribosomal subunit protein uL3
Chain LC: 60S ribosomal protein L4
Chain La: 60S ribosomal protein L27a
Chain Lb: Large ribosomal subunit protein eL29

J5_8UJD_005