3D structure

PDB id
8UJK (explore in PDB, NAKB, or RNA 3D Hub)
Description
In situ HHT and CHX treated A-P-Z state 80S ribosome
Experimental method
ELECTRON MICROSCOPY
Resolution
3.54 Å

Loop

Sequence
GGAGUC*GGAC*GUUC*GCC*GCAGAUC
Length
24 nucleotides
Bulged bases
8UJK|1|L5|C|2289, 8UJK|1|L5|U|2350
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J5_8UJK_002 not in the Motif Atlas
Homologous match to J5_8P9A_011
Geometric discrepancy: 0.0883
The information below is about J5_8P9A_011
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J5_08384.1
Basepair signature
cWW-tSH-tSS-tHW-F-cWS-F-tWS-cWW-cWW-F-cWW-cWW-F
Number of instances in this motif group
4

Unit IDs

8UJK|1|L5|G|1335
8UJK|1|L5|G|1336
8UJK|1|L5|A|1337
8UJK|1|L5|G|1338
8UJK|1|L5|U|1339
8UJK|1|L5|C|1340
*
8UJK|1|L5|G|1516
8UJK|1|L5|G|1517
8UJK|1|L5|A|1518
8UJK|1|L5|C|1519
*
8UJK|1|L5|G|1658
8UJK|1|L5|U|1659
8UJK|1|L5|U|1660
8UJK|1|L5|C|1661
*
8UJK|1|L5|G|2288
8UJK|1|L5|C|2289
8UJK|1|L5|C|2290
*
8UJK|1|L5|G|2345
8UJK|1|L5|C|2346
8UJK|1|L5|A|2347
8UJK|1|L5|G|2348
8UJK|1|L5|A|2349
8UJK|1|L5|U|2350
8UJK|1|L5|C|2351

Current chains

Chain L5
28S rRNA

Nearby chains

Chain L8
5.8S ribosomal RNA; 5.8S rRNA
Chain LC
60S ribosomal protein L4
Chain LL
Large ribosomal subunit protein eL13
Chain LN
60S ribosomal protein L15
Chain La
60S ribosomal protein L27a
Chain Le
60S ribosomal protein L32
Chain Lr
60S ribosomal protein L28

Coloring options:


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