J5_8UJK_004

3D structure

PDB id

8UJK (explore in PDB, NAKB, or RNA 3D Hub)

Description

In situ HHT and CHX treated A-P-Z state 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.54 Å

Loop

Sequence

CUG*CGGG*CUCUU*AGGUAG*UGAAUG

Length

24 nucleotides

Bulged bases

8UJK|1|L5|U|3818

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8UJK|1|L5|C|3696
8UJK|1|L5|U|3697
8UJK|1|L5|G|3698
*
8UJK|1|L5|C|3752
8UJK|1|L5|G|3753
8UJK|1|L5|G|3754
8UJK|1|L5|G|3755
*
8UJK|1|L5|C|3769
8UJK|1|L5|U|3770
8UJK|1|L5|C|3771
8UJK|1|L5|U|3772
8UJK|1|L5|U|3773
*
8UJK|1|L5|A|3775
8UJK|1|L5|G|3776
8UJK|1|L5|G|3777
8UJK|1|L5|U|3778
8UJK|1|L5|A|3779
8UJK|1|L5|G|3780
*
8UJK|1|L5|U|3814
8UJK|1|L5|G|3815
8UJK|1|L5|A|3816
8UJK|1|L5|A|3817
8UJK|1|L5|U|3818
8UJK|1|L5|G|3819

Current chains

Chain L5

28S rRNA

Nearby chains

Chain LA

60S ribosomal protein L8

Chain Ln

60S ribosomal protein L41

Chain Pt

Transfer RNA; tRNA

Chain S2

Small subunit ribosomal RNA; SSU rRNA