J5_8UJK_009

3D structure

PDB id

8UJK (explore in PDB, NAKB, or RNA 3D Hub)

Description

In situ HHT and CHX treated A-P-Z state 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.54 Å

Loop

Sequence

CGCUC*GGGC*GUG*CCG*CG

Length

17 nucleotides

Bulged bases

8UJK|1|S2|G|126, 8UJK|1|S2|C|127

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8UJK|1|S2|C|125
8UJK|1|S2|G|126
8UJK|1|S2|C|127
8UJK|1|S2|U|128
8UJK|1|S2|C|129
*
8UJK|1|S2|G|183
8UJK|1|S2|G|184
8UJK|1|S2|G|185
8UJK|1|S2|C|186
*
8UJK|1|S2|G|213
8UJK|1|S2|U|214
8UJK|1|S2|G|215
*
8UJK|1|S2|C|310
8UJK|1|S2|C|311
8UJK|1|S2|G|312
*
8UJK|1|S2|C|337
8UJK|1|S2|G|338

Current chains

Chain S2

18S rRNA

Nearby chains

Chain SE

Small ribosomal subunit protein eS4, X isoform

Chain SG

40S ribosomal protein S6

Chain SI

40S ribosomal protein S8