J5_8UKB_009
3D structure
- PDB id
- 8UKB (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- In situ HHT and CHX treated human hibernating state without E-tRNA 80S ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.05 Å
Loop
- Sequence
- CGCUC*GGGCG*CGUGCAUU*ACCUCGGGCCG*CG
- Length
- 31 nucleotides
- Bulged bases
- 8UKB|1|S2|G|126, 8UKB|1|S2|C|127, 8UKB|1|S2|U|305, 8UKB|1|S2|G|307
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
8UKB|1|S2|C|125
8UKB|1|S2|G|126
8UKB|1|S2|C|127
8UKB|1|S2|U|128
8UKB|1|S2|C|129
*
8UKB|1|S2|G|183
8UKB|1|S2|G|184
8UKB|1|S2|G|185
8UKB|1|S2|C|186
8UKB|1|S2|G|187
*
8UKB|1|S2|C|212
8UKB|1|S2|G|213
8UKB|1|S2|U|214
8UKB|1|S2|G|215
8UKB|1|S2|C|216
8UKB|1|S2|A|217
8UKB|1|S2|U|218
8UKB|1|S2|U|219
*
8UKB|1|S2|A|302
8UKB|1|S2|C|303
8UKB|1|S2|C|304
8UKB|1|S2|U|305
8UKB|1|S2|C|306
8UKB|1|S2|G|307
8UKB|1|S2|G|308
8UKB|1|S2|G|309
8UKB|1|S2|C|310
8UKB|1|S2|C|311
8UKB|1|S2|G|312
*
8UKB|1|S2|C|337
8UKB|1|S2|G|338
Current chains
- Chain S2
- 18S rRNA
Nearby chains
- Chain SE
- Small ribosomal subunit protein eS4, X isoform
- Chain SG
- 40S ribosomal protein S6
- Chain SI
- 40S ribosomal protein S8
Coloring options: