J5_8UQL_001

3D structure

PDB id

8UQL (explore in PDB, NAKB, or RNA 3D Hub)

Description

Escherichia coli transcription-translation coupled complex class B (TTC-B) containing RfaH in loaded state, mRNA with a 24 nt long spacer, and fMet-tRNAs in E-site and P-site of the ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

CUGG*CGUG*CUUUC*GAAG*CAAG

Length

21 nucleotides

Bulged bases

8UQL|1|D|U|439

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J5_8UQL_001 not in the Motif Atlas

Homologous match to J5_5J7L_001

Geometric discrepancy: 0.1142

The information below is about J5_5J7L_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J5_92941.1

Basepair signature

cWW-F-cHW-F-tSS-F-cWW-cWW-F-F-cWW-cWW-F-F

Number of instances in this motif group

1

Unit IDs

8UQL|1|D|C|36
8UQL|1|D|U|37
8UQL|1|D|G|38
8UQL|1|D|G|39
*
8UQL|1|D|C|403
8UQL|1|D|G|404
8UQL|1|D|U|405
8UQL|1|D|G|406
*
8UQL|1|D|C|436
8UQL|1|D|U|437
8UQL|1|D|U|438
8UQL|1|D|U|439
8UQL|1|D|C|440
*
8UQL|1|D|G|497
8UQL|1|D|A|498
8UQL|1|D|A|499
8UQL|1|D|G|500
*
8UQL|1|D|C|545
8UQL|1|D|A|546
8UQL|1|D|A|547
8UQL|1|D|G|548

Current chains

Chain D

16S rRNA

Nearby chains

Chain J

30S ribosomal protein S4

Chain R

30S ribosomal protein S12