J5_8UQL_003

3D structure

PDB id

8UQL (explore in PDB, NAKB, or RNA 3D Hub)

Description

Escherichia coli transcription-translation coupled complex class B (TTC-B) containing RfaH in loaded state, mRNA with a 24 nt long spacer, and fMet-tRNAs in E-site and P-site of the ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

CAAG*CGGACGGG*CAC*GAC*GGCAG

Length

23 nucleotides

Bulged bases

8UQL|1|D|A|109, 8UQL|1|D|C|352

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J5_8UQL_003 not in the Motif Atlas

Homologous match to J5_5J7L_003

Geometric discrepancy: 0.0804

The information below is about J5_5J7L_003

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J5_59910.6

Basepair signature

cWW-F-tSS-cSS-F-cWW-cWW-cWW-F-F-cWW-F-F-cWW-cWW

Number of instances in this motif group

4

Unit IDs

8UQL|1|D|C|58
8UQL|1|D|A|59
8UQL|1|D|A|60
8UQL|1|D|G|61
*
8UQL|1|D|C|106
8UQL|1|D|G|107
8UQL|1|D|G|108
8UQL|1|D|A|109
8UQL|1|D|C|110
8UQL|1|D|G|111
8UQL|1|D|G|112
8UQL|1|D|G|113
*
8UQL|1|D|C|314
8UQL|1|D|A|315
8UQL|1|D|C|316
*
8UQL|1|D|G|337
8UQL|1|D|A|338
8UQL|1|D|C|339
*
8UQL|1|D|G|350
8UQL|1|D|G|351
8UQL|1|D|C|352
8UQL|1|D|A|353
8UQL|1|D|G|354

Current chains

Chain D

16S rRNA

Nearby chains

Chain E

30S ribosomal protein S20

Chain U

30S ribosomal protein S16

Chain t

50S ribosomal protein L14