J5_8UQL_004

3D structure

PDB id

8UQL (explore in PDB, NAKB, or RNA 3D Hub)

Description

Escherichia coli transcription-translation coupled complex class B (TTC-B) containing RfaH in loaded state, mRNA with a 24 nt long spacer, and fMet-tRNAs in E-site and P-site of the ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

CGAUGAAG*CGAAUG*CA*UAU*AGG

Length

22 nucleotides

Bulged bases

8UQL|1|a|U|50

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J5_8UQL_004 not in the Motif Atlas

Homologous match to J5_5J7L_013

Geometric discrepancy: 0.0463

The information below is about J5_5J7L_013

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J5_01737.2

Basepair signature

cWW-F-cWW-F-cWW-tSH-tHH-tHS-cWW-cWW-cWW-F

Number of instances in this motif group

5

Unit IDs

8UQL|1|a|C|47
8UQL|1|a|G|48
8UQL|1|a|A|49
8UQL|1|a|U|50
8UQL|1|a|G|51
8UQL|1|a|A|52
8UQL|1|a|A|53
8UQL|1|a|G|54
*
8UQL|1|a|C|116
8UQL|1|a|G|117
8UQL|1|a|A|118
8UQL|1|a|A|119
8UQL|1|a|U|120
8UQL|1|a|G|121
*
8UQL|1|a|C|130
8UQL|1|a|A|131
*
8UQL|1|a|U|148
8UQL|1|a|A|149
8UQL|1|a|U|150
*
8UQL|1|a|A|176
8UQL|1|a|G|177
8UQL|1|a|G|178

Current chains

Chain a

23S rRNA

Nearby chains

Chain m

50S ribosomal protein L34