J5_8UQP_002

3D structure

PDB id

8UQP (explore in PDB, NAKB, or RNA 3D Hub)

Description

Escherichia coli transcription-translation coupled complex class B (TTC-B) containing RfaH bound to ops signal, mRNA with a 24 nt long spacer, and fMet-tRNAs in E-site and P-site of the ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

CUGG*CGUG*CUUUCAG*CAGAAGAAG*CAAG

Length

28 nucleotides

Bulged bases

8UQP|1|D|U|439

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J5_8UQP_002 not in the Motif Atlas

Homologous match to J5_5J7L_002

Geometric discrepancy: 0.0955

The information below is about J5_5J7L_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J5_67416.1

Basepair signature

cWW-F-F-F-cWW-tHW-F-tHW-tSS-cWW-cHW-cWW-F-cWW-F-cWW-F-F

Number of instances in this motif group

1

Unit IDs

8UQP|1|D|C|36
8UQP|1|D|U|37
8UQP|1|D|G|38
8UQP|1|D|G|39
*
8UQP|1|D|C|403
8UQP|1|D|G|404
8UQP|1|D|U|405
8UQP|1|D|G|406
*
8UQP|1|D|C|436
8UQP|1|D|U|437
8UQP|1|D|U|438
8UQP|1|D|U|439
8UQP|1|D|C|440
8UQP|1|D|A|441
8UQP|1|D|G|442
*
8UQP|1|D|C|492
8UQP|1|D|A|493
8UQP|1|D|G|494
8UQP|1|D|A|495
8UQP|1|D|A|496
8UQP|1|D|G|497
8UQP|1|D|A|498
8UQP|1|D|A|499
8UQP|1|D|G|500
*
8UQP|1|D|C|545
8UQP|1|D|A|546
8UQP|1|D|A|547
8UQP|1|D|G|548

Current chains

Chain D

16S rRNA

Nearby chains

Chain J

30S ribosomal protein S4

Chain R

30S ribosomal protein S12