J5_8UQP_003

3D structure

PDB id

8UQP (explore in PDB, NAKB, or RNA 3D Hub)

Description

Escherichia coli transcription-translation coupled complex class B (TTC-B) containing RfaH bound to ops signal, mRNA with a 24 nt long spacer, and fMet-tRNAs in E-site and P-site of the ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

CAAG*CGGACGGG*CAC*GAC*GGCAG

Length

23 nucleotides

Bulged bases

8UQP|1|D|A|109, 8UQP|1|D|C|352

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J5_8UQP_003 not in the Motif Atlas

Homologous match to J5_5J7L_003

Geometric discrepancy: 0.0804

The information below is about J5_5J7L_003

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J5_59910.6

Basepair signature

cWW-F-tSS-cSS-F-cWW-cWW-cWW-F-F-cWW-F-F-cWW-cWW

Number of instances in this motif group

4

Unit IDs

8UQP|1|D|C|58
8UQP|1|D|A|59
8UQP|1|D|A|60
8UQP|1|D|G|61
*
8UQP|1|D|C|106
8UQP|1|D|G|107
8UQP|1|D|G|108
8UQP|1|D|A|109
8UQP|1|D|C|110
8UQP|1|D|G|111
8UQP|1|D|G|112
8UQP|1|D|G|113
*
8UQP|1|D|C|314
8UQP|1|D|A|315
8UQP|1|D|C|316
*
8UQP|1|D|G|337
8UQP|1|D|A|338
8UQP|1|D|C|339
*
8UQP|1|D|G|350
8UQP|1|D|G|351
8UQP|1|D|C|352
8UQP|1|D|A|353
8UQP|1|D|G|354

Current chains

Chain D

16S rRNA

Nearby chains

Chain E

30S ribosomal protein S20

Chain U

30S ribosomal protein S16

Chain t

50S ribosomal protein L14