J5_8URM_007

3D structure

PDB id

8URM (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 70S ribosome with unmodified tRNAPro(GGG) bound to slippery P-site CCC-C codon and tRNAVal(UAC) in the A site

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

CUGGC*GCGUG*CUUUCAG*CAGAAGAAG*CAAG

Length

30 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8URM|1|2|C|36
8URM|1|2|U|37
8URM|1|2|G|38
8URM|1|2|G|39
8URM|1|2|C|40
*
8URM|1|2|G|402
8URM|1|2|C|403
8URM|1|2|G|404
8URM|1|2|U|405
8URM|1|2|G|406
*
8URM|1|2|C|436
8URM|1|2|U|437
8URM|1|2|U|438
8URM|1|2|U|439
8URM|1|2|C|440
8URM|1|2|A|441
8URM|1|2|G|442
*
8URM|1|2|C|492
8URM|1|2|A|493
8URM|1|2|G|494
8URM|1|2|A|495
8URM|1|2|A|496
8URM|1|2|G|497
8URM|1|2|A|498
8URM|1|2|A|499
8URM|1|2|G|500
*
8URM|1|2|C|545
8URM|1|2|A|546
8URM|1|2|A|547
8URM|1|2|G|548

Current chains

Chain 2

16S ribosomal RNA

Nearby chains

Chain i

30S ribosomal protein S4

Chain q

Small ribosomal subunit protein uS12