J5_8URM_008

3D structure

PDB id

8URM (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 70S ribosome with unmodified tRNAPro(GGG) bound to slippery P-site CCC-C codon and tRNAVal(UAC) in the A site

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

CAAG*CGGACGGG*CAC*GAC*GGCAG

Length

23 nucleotides

Bulged bases

8URM|1|2|A|60, 8URM|1|2|A|109, 8URM|1|2|C|352

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8URM|1|2|C|58
8URM|1|2|A|59
8URM|1|2|A|60
8URM|1|2|G|61
*
8URM|1|2|C|106
8URM|1|2|G|107
8URM|1|2|G|108
8URM|1|2|A|109
8URM|1|2|C|110
8URM|1|2|G|111
8URM|1|2|G|112
8URM|1|2|G|113
*
8URM|1|2|C|314
8URM|1|2|A|315
8URM|1|2|C|316
*
8URM|1|2|G|337
8URM|1|2|A|338
8URM|1|2|C|339
*
8URM|1|2|G|350
8URM|1|2|G|351
8URM|1|2|C|352
8URM|1|2|A|353
8URM|1|2|G|354

Current chains

Chain 2

16S ribosomal RNA

Nearby chains

Chain K

50S ribosomal protein L14

Chain P

Large ribosomal subunit protein bL19

Chain u

30S ribosomal protein S16

Chain y

30S ribosomal protein S20