J5_8UTI_006
3D structure
- PDB id
- 8UTI (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Eukaryotic 80S ribosome with Reh1 and A/P site tRNA
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.13 Å
Loop
- Sequence
- UUGA*UUUG*CA*UG*CAGAAAA
- Length
- 19 nucleotides
- Bulged bases
- 8UTI|1|A|G|2418, 8UTI|1|A|A|2799, 8UTI|1|A|G|2800, 8UTI|1|A|A|2801, 8UTI|1|A|A|2802
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J5_8UTI_006 not in the Motif Atlas
- Homologous match to J5_8P9A_015
- Geometric discrepancy: 0.2708
- The information below is about J5_8P9A_015
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J5_96125.1
- Basepair signature
- cWW-cWH-cWH-tSS-cWW-cWW-cWW-F-cWW
- Number of instances in this motif group
- 6
Unit IDs
8UTI|1|A|U|2416
8UTI|1|A|U|2417
8UTI|1|A|G|2418
8UTI|1|A|A|2419
*
8UTI|1|A|U|2611
8UTI|1|A|U|2612
8UTI|1|A|U|2613
8UTI|1|A|G|2614
*
8UTI|1|A|C|2627
8UTI|1|A|A|2628
*
8UTI|1|A|U|2650
8UTI|1|A|G|2651
*
8UTI|1|A|C|2798
8UTI|1|A|A|2799
8UTI|1|A|G|2800
8UTI|1|A|A|2801
8UTI|1|A|A|2802
8UTI|1|A|A|2803
8UTI|1|A|A|2804
Current chains
- Chain A
- 25S rRNA
Nearby chains
- Chain LD
- 60S ribosomal protein L2-A
- Chain LP
- 60S ribosomal protein L15-A
- Chain LS
- 60S ribosomal protein L18-A
- Chain LV
- 60S ribosomal protein L21-A
- Chain Lc
- 60S ribosomal protein L28
- Chain Ld
- 60S ribosomal protein L29
- Chain Lq
- 60S ribosomal protein L42-A
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