J5_8UU4_006
3D structure
- PDB id
- 8UU4 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of the Listeria innocua 70S ribosome in complex with HPF (structure I-A)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3 Å
Loop
- Sequence
- GAAAGACC*GGAUAACA*UCGAUGU*GUUCAG*CGGUCC
- Length
- 35 nucleotides
- Bulged bases
- 8UU4|1|A|A|2095, 8UU4|1|A|A|2481, 8UU4|1|A|U|2642
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
8UU4|1|A|G|2090
8UU4|1|A|A|2091
8UU4|1|A|A|2092
8UU4|1|A|A|2093
8UU4|1|A|G|2094
8UU4|1|A|A|2095
8UU4|1|A|C|2096
8UU4|1|A|C|2097
*
8UU4|1|A|G|2479
8UU4|1|A|G|2480
8UU4|1|A|A|2481
8UU4|1|A|U|2482
8UU4|1|A|A|2483
8UU4|1|A|A|2484
8UU4|1|A|C|2485
8UU4|1|A|A|2486
*
8UU4|1|A|U|2533
8UU4|1|A|C|2534
8UU4|1|A|G|2535
8UU4|1|A|A|2536
8UU4|1|A|U|2537
8UU4|1|A|G|2538
8UU4|1|A|U|2539
*
8UU4|1|A|G|2616
8UU4|1|A|U|2617
8UU4|1|A|U|2618
8UU4|1|A|C|2619
8UU4|1|A|A|2620
8UU4|1|A|G|2621
*
8UU4|1|A|C|2639
8UU4|1|A|G|2640
8UU4|1|A|G|2641
8UU4|1|A|U|2642
8UU4|1|A|C|2643
8UU4|1|A|C|2644
Current chains
- Chain A
- 23S Ribosomal RNA
Nearby chains
- Chain 4
- Large ribosomal subunit protein bL32
- Chain C
- Large ribosomal subunit protein uL2
- Chain D
- Large ribosomal subunit protein uL3
- Chain E
- Large ribosomal subunit protein uL4
- Chain N
- Large ribosomal subunit protein uL15
- Chain O
- Large ribosomal subunit protein uL16
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