J5_8UU5_009

3D structure

PDB id

8UU5 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the Listeria innocua 70S ribosome (head-swiveled) in complex with pe/E-tRNA (structure I-B)

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

CUGG*CGUG*CUGUUG*CCAGAAAG*CAAG

Length

26 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8UU5|1|a|C|36
8UU5|1|a|U|37
8UU5|1|a|G|38
8UU5|1|a|G|39
*
8UU5|1|a|C|411
8UU5|1|a|G|412
8UU5|1|a|U|413
8UU5|1|a|G|414
*
8UU5|1|a|C|444
8UU5|1|a|U|445
8UU5|1|a|G|446
8UU5|1|a|U|447
8UU5|1|a|U|448
8UU5|1|a|G|449
*
8UU5|1|a|C|501
8UU5|1|a|C|502
8UU5|1|a|A|503
8UU5|1|a|G|504
8UU5|1|a|A|505
8UU5|1|a|A|506
8UU5|1|a|A|507
8UU5|1|a|G|508
*
8UU5|1|a|C|553
8UU5|1|a|A|554
8UU5|1|a|A|555
8UU5|1|a|G|556

Current chains

Chain a

16S Ribosomal RNA

Nearby chains

Chain d

Small ribosomal subunit protein uS4

Chain l

Small ribosomal subunit protein uS12