J5_8UU7_008

3D structure

PDB id

8UU7 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the Listeria innocua 70S ribosome in complex with HflXr, HPF, and E-site tRNA (structure II-B)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

CUGG*CGUG*CUGUUG*CCAGAAAG*CAAG

Length

26 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8UU7|1|a|C|36
8UU7|1|a|U|37
8UU7|1|a|G|38
8UU7|1|a|G|39
*
8UU7|1|a|C|411
8UU7|1|a|G|412
8UU7|1|a|U|413
8UU7|1|a|G|414
*
8UU7|1|a|C|444
8UU7|1|a|U|445
8UU7|1|a|G|446
8UU7|1|a|U|447
8UU7|1|a|U|448
8UU7|1|a|G|449
*
8UU7|1|a|C|501
8UU7|1|a|C|502
8UU7|1|a|A|503
8UU7|1|a|G|504
8UU7|1|a|A|505
8UU7|1|a|A|506
8UU7|1|a|A|507
8UU7|1|a|G|508
*
8UU7|1|a|C|553
8UU7|1|a|A|554
8UU7|1|a|A|555
8UU7|1|a|G|556

Current chains

Chain a

16S Ribosomal RNA

Nearby chains

Chain d

Small ribosomal subunit protein uS4

Chain l

Small ribosomal subunit protein uS12