J5_8UU9_001

3D structure

PDB id

8UU9 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the ratcheted Listeria innocua 70S ribosome (head-swiveled) in complex with HflXr and pe/E-tRNA (structure II-D)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

CGAAGAAG*CGAAUG*CA*UAU*AAG

Length

22 nucleotides

Bulged bases

8UU9|1|A|A|50

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J5_8UU9_001 not in the Motif Atlas

Homologous match to J5_5J7L_013

Geometric discrepancy: 0.0805

The information below is about J5_5J7L_013

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J5_01737.2

Basepair signature

cWW-F-cWW-F-cWW-tSH-tHH-tHS-cWW-cWW-cWW-F

Number of instances in this motif group

5

Unit IDs

8UU9|1|A|C|47
8UU9|1|A|G|48
8UU9|1|A|A|49
8UU9|1|A|A|50
8UU9|1|A|G|51
8UU9|1|A|A|52
8UU9|1|A|A|53
8UU9|1|A|G|54
*
8UU9|1|A|C|115
8UU9|1|A|G|116
8UU9|1|A|A|117
8UU9|1|A|A|118
8UU9|1|A|U|119
8UU9|1|A|G|120
*
8UU9|1|A|C|129
8UU9|1|A|A|130
*
8UU9|1|A|U|149
8UU9|1|A|A|150
8UU9|1|A|U|151
*
8UU9|1|A|A|177
8UU9|1|A|A|178
8UU9|1|A|G|179

Current chains

Chain A

23S Ribosomal RNA

Nearby chains

Chain 6

Large ribosomal subunit protein bL34

Chain V

Large ribosomal subunit protein uL23