J5_8UU9_002

3D structure

PDB id

8UU9 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the ratcheted Listeria innocua 70S ribosome (head-swiveled) in complex with HflXr and pe/E-tRNA (structure II-D)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

CCAAAC*GGGUUGUA*UGAGUAC*GGAAUCCG*CAAG

Length

33 nucleotides

Bulged bases

8UU9|1|A|U|300, 8UU9|1|A|C|451

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8UU9|1|A|C|270
8UU9|1|A|C|271
8UU9|1|A|A|272
8UU9|1|A|A|273
8UU9|1|A|A|274
8UU9|1|A|C|275
*
8UU9|1|A|G|294
8UU9|1|A|G|295
8UU9|1|A|G|296
8UU9|1|A|U|297
8UU9|1|A|U|298
8UU9|1|A|G|299
8UU9|1|A|U|300
8UU9|1|A|A|301
*
8UU9|1|A|U|415
8UU9|1|A|G|416
8UU9|1|A|A|417
8UU9|1|A|G|418
8UU9|1|A|U|419
8UU9|1|A|A|420
8UU9|1|A|C|421
*
8UU9|1|A|G|445
8UU9|1|A|G|446
8UU9|1|A|A|447
8UU9|1|A|A|448
8UU9|1|A|U|449
8UU9|1|A|C|450
8UU9|1|A|C|451
8UU9|1|A|G|452
*
8UU9|1|A|C|467
8UU9|1|A|A|468
8UU9|1|A|A|469
8UU9|1|A|G|470

Current chains

Chain A

23S Ribosomal RNA

Nearby chains

Chain Z

Large ribosomal subunit protein bL28