J5_8UU9_004
3D structure
- PDB id
- 8UU9 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of the ratcheted Listeria innocua 70S ribosome (head-swiveled) in complex with HflXr and pe/E-tRNA (structure II-D)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.1 Å
Loop
- Sequence
- CGAGUU*AGAC*GUUC*GC*GAGAAUG
- Length
- 23 nucleotides
- Bulged bases
- 8UU9|1|A|U|1300
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J5_8UU9_004 not in the Motif Atlas
- Homologous match to J5_4WF9_004
- Geometric discrepancy: 0.088
- The information below is about J5_4WF9_004
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J5_74302.5
- Basepair signature
- cWW-tSH-tSS-tHW-F-cHS-F-tWS-cWW-cWW-F-cWW-cWW-F
- Number of instances in this motif group
- 4
Unit IDs
8UU9|1|A|C|627
8UU9|1|A|G|628
8UU9|1|A|A|629
8UU9|1|A|G|630
8UU9|1|A|U|631
8UU9|1|A|U|632
*
8UU9|1|A|A|714
8UU9|1|A|G|715
8UU9|1|A|A|716
8UU9|1|A|C|717
*
8UU9|1|A|G|855
8UU9|1|A|U|856
8UU9|1|A|U|857
8UU9|1|A|C|858
*
8UU9|1|A|G|1241
8UU9|1|A|C|1242
*
8UU9|1|A|G|1295
8UU9|1|A|A|1296
8UU9|1|A|G|1297
8UU9|1|A|A|1298
8UU9|1|A|A|1299
8UU9|1|A|U|1300
8UU9|1|A|G|1301
Current chains
- Chain A
- 23S Ribosomal RNA
Nearby chains
- Chain 7
- Large ribosomal subunit protein bL35
- Chain E
- Large ribosomal subunit protein uL4
- Chain N
- Large ribosomal subunit protein uL15
- Chain S
- Large ribosomal subunit protein bL20
- Chain T
- Large ribosomal subunit protein bL21
Coloring options: