J5_8UU9_008

3D structure

PDB id

8UU9 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the ratcheted Listeria innocua 70S ribosome (head-swiveled) in complex with HflXr and pe/E-tRNA (structure II-D)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

CUGG*CGUG*CUGUUG*CCAGAAAG*CAAG

Length

26 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8UU9|1|a|C|36
8UU9|1|a|U|37
8UU9|1|a|G|38
8UU9|1|a|G|39
*
8UU9|1|a|C|411
8UU9|1|a|G|412
8UU9|1|a|U|413
8UU9|1|a|G|414
*
8UU9|1|a|C|444
8UU9|1|a|U|445
8UU9|1|a|G|446
8UU9|1|a|U|447
8UU9|1|a|U|448
8UU9|1|a|G|449
*
8UU9|1|a|C|501
8UU9|1|a|C|502
8UU9|1|a|A|503
8UU9|1|a|G|504
8UU9|1|a|A|505
8UU9|1|a|A|506
8UU9|1|a|A|507
8UU9|1|a|G|508
*
8UU9|1|a|C|553
8UU9|1|a|A|554
8UU9|1|a|A|555
8UU9|1|a|G|556

Current chains

Chain a

16S Ribosomal RNA

Nearby chains

Chain d

Small ribosomal subunit protein uS4

Chain l

Small ribosomal subunit protein uS12