J5_8UVS_005

3D structure

PDB id

8UVS (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the wild-type Thermus thermophilus 70S ribosome in complex with spectinomycin derivative 2694, mRNA, deacylated A- and E-site tRNAphe, and deacylated P-site tRNAmet at 2.75A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.75 Å

Loop

Sequence

GCAAGUUGG*UG*CC*GUGAACAGG*CGC

Length

25 nucleotides

Bulged bases

8UVS|1|1A|G|1758, 8UVS|1|1A|G|1763

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J5_8UVS_005 not in the Motif Atlas

Homologous match to J5_9DFE_005

Geometric discrepancy: 0.0572

The information below is about J5_9DFE_005

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J5_99177.1

Basepair signature

cWW-F-F-F-cWW-F-F-F-F-F-F-F-F-F-cWW-F-cWW-cWW

Number of instances in this motif group

10

Unit IDs

8UVS|1|1A|G|1674
8UVS|1|1A|C|1675
8UVS|1|1A|A|1676
8UVS|1|1A|A|1677
8UVS|1|1A|G|1678
8UVS|1|1A|U|1679
8UVS|1|1A|U|1680
8UVS|1|1A|G|1681
8UVS|1|1A|G|1682
*
8UVS|1|1A|U|1706
8UVS|1|1A|G|1707
*
8UVS|1|1A|C|1751
8UVS|1|1A|C|1752
*
8UVS|1|1A|G|1756
8UVS|1|1A|U|1757
8UVS|1|1A|G|1758
8UVS|1|1A|A|1759
8UVS|1|1A|A|1760
8UVS|1|1A|C|1761
8UVS|1|1A|A|1762
8UVS|1|1A|G|1763
8UVS|1|1A|G|1764
*
8UVS|1|1A|C|1988
8UVS|1|1A|G|1989
8UVS|1|1A|C|1990

Current chains

Chain 1A

23S Ribosomal RNA

Nearby chains

Chain 1E

50S ribosomal protein L3

Chain 1O

50S ribosomal protein L14

Chain 1T

50S ribosomal protein L19

Chain 1a

Small subunit ribosomal RNA; SSU rRNA