J5_8UXA_003
3D structure
- PDB id
- 8UXA (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Glucose treated mitochondrial ribosome of saccharomyces cerevisiae class I
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.2 Å
Loop
- Sequence
- GAAAGACC*GGAUAACAG*CCUCGAUGUCG*UGGGUUAAA*UGGUUC
- Length
- 43 nucleotides
- Bulged bases
- 8UXA|1|A|A|1959, 8UXA|1|A|A|1960, 8UXA|1|A|A|2714, 8UXA|1|A|U|2715, 8UXA|1|A|A|2716, 8UXA|1|A|G|2768, 8UXA|1|A|G|2771, 8UXA|1|A|C|2773, 8UXA|1|A|U|2876
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
8UXA|1|A|G|1957
8UXA|1|A|A|1958
8UXA|1|A|A|1959
8UXA|1|A|A|1960
8UXA|1|A|G|1961
8UXA|1|A|A|1962
8UXA|1|A|C|1963
8UXA|1|A|C|1964
*
8UXA|1|A|G|2712
8UXA|1|A|G|2713
8UXA|1|A|A|2714
8UXA|1|A|U|2715
8UXA|1|A|A|2716
8UXA|1|A|A|2717
8UXA|1|A|C|2718
8UXA|1|A|A|2719
8UXA|1|A|G|2720
*
8UXA|1|A|C|2764
8UXA|1|A|C|2765
8UXA|1|A|U|2766
8UXA|1|A|C|2767
8UXA|1|A|G|2768
8UXA|1|A|A|2769
8UXA|1|A|U|2770
8UXA|1|A|G|2771
8UXA|1|A|U|2772
8UXA|1|A|C|2773
8UXA|1|A|G|2774
*
8UXA|1|A|U|2847
8UXA|1|A|G|2848
8UXA|1|A|G|2849
8UXA|1|A|G|2850
8UXA|1|A|U|2851
8UXA|1|A|U|2852
8UXA|1|A|A|2853
8UXA|1|A|A|2854
8UXA|1|A|A|2855
*
8UXA|1|A|U|2873
8UXA|1|A|G|2874
8UXA|1|A|G|2875
8UXA|1|A|U|2876
8UXA|1|A|U|2877
8UXA|1|A|C|2878
Current chains
- Chain A
- Large ribosomal subunit rRNA
Nearby chains
- Chain AM
- Transfer RNA; tRNA
- Chain B
- Large ribosomal subunit protein uL2m
- Chain C
- Large ribosomal subunit protein uL3m
- Chain D
- Large ribosomal subunit protein uL4m
- Chain J
- Large ribosomal subunit protein uL15m
- Chain K
- Large ribosomal subunit protein uL16m
- Chain O
- Large ribosomal subunit protein uL22m
- Chain W
- Large ribosomal subunit protein bL32m
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