J5_8UXA_004

3D structure

PDB id

8UXA (explore in PDB, NAKB, or RNA 3D Hub)

Description

Glucose treated mitochondrial ribosome of saccharomyces cerevisiae class I

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

UUUA*UUUU*AU*AG*CGAAUAAAA

Length

21 nucleotides

Bulged bases

8UXA|1|A|U|1976, 8UXA|1|A|G|2694, 8UXA|1|A|A|2695, 8UXA|1|A|A|2696, 8UXA|1|A|U|2697

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8UXA|1|A|U|1974
8UXA|1|A|U|1975
8UXA|1|A|U|1976
8UXA|1|A|A|1977
*
8UXA|1|A|U|2269
8UXA|1|A|U|2270
8UXA|1|A|U|2271
8UXA|1|A|U|2272
*
8UXA|1|A|A|2284
8UXA|1|A|U|2285
*
8UXA|1|A|A|2308
8UXA|1|A|G|2309
*
8UXA|1|A|C|2693
8UXA|1|A|G|2694
8UXA|1|A|A|2695
8UXA|1|A|A|2696
8UXA|1|A|U|2697
8UXA|1|A|A|2698
8UXA|1|A|A|2699
8UXA|1|A|A|2700
8UXA|1|A|A|2701

Current chains

Chain A

Large ribosomal subunit rRNA

Nearby chains

Chain B

Large ribosomal subunit protein uL2m

Chain J

Large ribosomal subunit protein uL15m

Chain R

Large ribosomal subunit protein bL27m

Chain S

Large ribosomal subunit protein bL28m