J5_8UXB_009

3D structure

PDB id

8UXB (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 70S ribosome with unmodified P/E-tRNAPro(GGG) bound to slippery P-site CCC-C codon

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

CAAG*CGGACGGG*CAC*GAC*GGCAG

Length

23 nucleotides

Bulged bases

8UXB|1|2|A|60, 8UXB|1|2|A|109, 8UXB|1|2|C|352

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8UXB|1|2|C|58
8UXB|1|2|A|59
8UXB|1|2|A|60
8UXB|1|2|G|61
*
8UXB|1|2|C|106
8UXB|1|2|G|107
8UXB|1|2|G|108
8UXB|1|2|A|109
8UXB|1|2|C|110
8UXB|1|2|G|111
8UXB|1|2|G|112
8UXB|1|2|G|113
*
8UXB|1|2|C|314
8UXB|1|2|A|315
8UXB|1|2|C|316
*
8UXB|1|2|G|337
8UXB|1|2|A|338
8UXB|1|2|C|339
*
8UXB|1|2|G|350
8UXB|1|2|G|351
8UXB|1|2|C|352
8UXB|1|2|A|353
8UXB|1|2|G|354

Current chains

Chain 2

16S ribosomal RNA

Nearby chains

Chain K

50S ribosomal protein L14

Chain u

30S ribosomal protein S16

Chain y

30S ribosomal protein S20