J5_8V84_001
3D structure
- PDB id
- 8V84 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- 60S ribosome biogenesis intermediate (Dbp10 catalytic structure - Overall map)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.7 Å
Loop
- Sequence
- AGG*CGAUGAAG*UGAACG*CG*CAU
- Length
- 22 nucleotides
- Bulged bases
- 8V84|1|2|U|38
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J5_8V84_001 not in the Motif Atlas
- Homologous match to J5_8P9A_010
- Geometric discrepancy: 0.1426
- The information below is about J5_8P9A_010
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J5_27223.1
- Basepair signature
- cWW-cWW-cWW-cWW-F-cWW-F-tSH-F-tHH-tHS-cWW
- Number of instances in this motif group
- 7
Unit IDs
8V84|1|1|A|20
8V84|1|1|G|21
8V84|1|1|G|22
*
8V84|1|2|C|35
8V84|1|2|G|36
8V84|1|2|A|37
8V84|1|2|U|38
8V84|1|2|G|39
8V84|1|2|A|40
8V84|1|2|A|41
8V84|1|2|G|42
*
8V84|1|2|U|102
8V84|1|2|G|103
8V84|1|2|A|104
8V84|1|2|A|105
8V84|1|2|C|106
8V84|1|2|G|107
*
8V84|1|2|C|115
8V84|1|2|G|116
*
8V84|1|2|C|137
8V84|1|2|A|138
8V84|1|2|U|139
Current chains
- Chain 1
- Saccharomyces cerevisiae 25S ribosomal RNA
- Chain 2
- Saccharomyces cerevisiae 5.8S ribosomal RNA
Nearby chains
- Chain N
- Large ribosomal subunit protein eL15A
- Chain h
- 60S ribosomal protein L35-A
- Chain j
- 60S ribosomal protein L37-A
- Chain v
- Nucleolar protein 16
Coloring options: