J5_8V9J_001

3D structure

PDB id

8V9J (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the Mycobacterium smegmatis 70S ribosome in complex with hibernation factor Msmeg1130 (Balon) (Structure 4)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

CGAUGAAG*CGAAUG*CG*CAC*GGG

Length

22 nucleotides

Bulged bases

8V9J|1|A|U|47

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J5_8V9J_001 not in the Motif Atlas

Homologous match to J5_5J7L_013

Geometric discrepancy: 0.1011

The information below is about J5_5J7L_013

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J5_01737.2

Basepair signature

cWW-F-cWW-F-cWW-tSH-tHH-tHS-cWW-cWW-cWW-F

Number of instances in this motif group

5

Unit IDs

8V9J|1|A|C|44
8V9J|1|A|G|45
8V9J|1|A|A|46
8V9J|1|A|U|47
8V9J|1|A|G|48
8V9J|1|A|A|49
8V9J|1|A|A|50
8V9J|1|A|G|51
*
8V9J|1|A|C|113
8V9J|1|A|G|114
8V9J|1|A|A|115
8V9J|1|A|A|116
8V9J|1|A|U|117
8V9J|1|A|G|118
*
8V9J|1|A|C|127
8V9J|1|A|G|128
*
8V9J|1|A|C|147
8V9J|1|A|A|148
8V9J|1|A|C|149
*
8V9J|1|A|G|175
8V9J|1|A|G|176
8V9J|1|A|G|177

Current chains

Chain A

23S Ribosomal RNA

Nearby chains

Chain 6

50S ribosomal protein L34

Chain V

50S Ribosomal Protein L23