J5_8V9J_002

3D structure

PDB id

8V9J (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the Mycobacterium smegmatis 70S ribosome in complex with hibernation factor Msmeg1130 (Balon) (Structure 4)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

CUAAAC*GGGUUGUG*CGAGUAG*UGAAUCUG*UAAG

Length

33 nucleotides

Bulged bases

8V9J|1|A|U|318, 8V9J|1|A|U|493

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8V9J|1|A|C|269
8V9J|1|A|U|270
8V9J|1|A|A|271
8V9J|1|A|A|272
8V9J|1|A|A|273
8V9J|1|A|C|274
*
8V9J|1|A|G|312
8V9J|1|A|G|313
8V9J|1|A|G|314
8V9J|1|A|U|315
8V9J|1|A|U|316
8V9J|1|A|G|317
8V9J|1|A|U|318
8V9J|1|A|G|319
*
8V9J|1|A|C|457
8V9J|1|A|G|458
8V9J|1|A|A|459
8V9J|1|A|G|460
8V9J|1|A|U|461
8V9J|1|A|A|462
8V9J|1|A|G|463
*
8V9J|1|A|U|487
8V9J|1|A|G|488
8V9J|1|A|A|489
8V9J|1|A|A|490
8V9J|1|A|U|491
8V9J|1|A|C|492
8V9J|1|A|U|493
8V9J|1|A|G|494
*
8V9J|1|A|U|509
8V9J|1|A|A|510
8V9J|1|A|A|511
8V9J|1|A|G|512

Current chains

Chain A

23S Ribosomal RNA

Nearby chains

Chain H

50S ribosomal protein L9

Chain Z

50S Ribosomal Protein L28