J5_8V9L_001

3D structure

PDB id

8V9L (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the Mycobacterium smegmatis 70S ribosome in complex with hibernation factor Msmeg1130 (Balon) and MsmegEF-Tu(GDP) (Composite structure 6)

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

CGAUGAAG*CGAAUG*CG*CAC*GGG

Length

22 nucleotides

Bulged bases

8V9L|1|A|U|47

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J5_8V9L_001 not in the Motif Atlas

Homologous match to J5_5J7L_013

Geometric discrepancy: 0.1005

The information below is about J5_5J7L_013

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J5_01737.2

Basepair signature

cWW-F-cWW-F-cWW-tSH-tHH-tHS-cWW-cWW-cWW-F

Number of instances in this motif group

5

Unit IDs

8V9L|1|A|C|44
8V9L|1|A|G|45
8V9L|1|A|A|46
8V9L|1|A|U|47
8V9L|1|A|G|48
8V9L|1|A|A|49
8V9L|1|A|A|50
8V9L|1|A|G|51
*
8V9L|1|A|C|113
8V9L|1|A|G|114
8V9L|1|A|A|115
8V9L|1|A|A|116
8V9L|1|A|U|117
8V9L|1|A|G|118
*
8V9L|1|A|C|127
8V9L|1|A|G|128
*
8V9L|1|A|C|147
8V9L|1|A|A|148
8V9L|1|A|C|149
*
8V9L|1|A|G|175
8V9L|1|A|G|176
8V9L|1|A|G|177

Current chains

Chain A

23S Ribosomal RNA

Nearby chains

Chain 6

50S ribosomal protein L34

Chain V

Large ribosomal subunit protein uL23