J5_8V9L_002

3D structure

PDB id

8V9L (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the Mycobacterium smegmatis 70S ribosome in complex with hibernation factor Msmeg1130 (Balon) and MsmegEF-Tu(GDP) (Composite structure 6)

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

CUAAAC*GGGUUGUG*CGAGUAG*UGAAUCUG*UAAG

Length

33 nucleotides

Bulged bases

8V9L|1|A|U|318, 8V9L|1|A|U|493

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8V9L|1|A|C|269
8V9L|1|A|U|270
8V9L|1|A|A|271
8V9L|1|A|A|272
8V9L|1|A|A|273
8V9L|1|A|C|274
*
8V9L|1|A|G|312
8V9L|1|A|G|313
8V9L|1|A|G|314
8V9L|1|A|U|315
8V9L|1|A|U|316
8V9L|1|A|G|317
8V9L|1|A|U|318
8V9L|1|A|G|319
*
8V9L|1|A|C|457
8V9L|1|A|G|458
8V9L|1|A|A|459
8V9L|1|A|G|460
8V9L|1|A|U|461
8V9L|1|A|A|462
8V9L|1|A|G|463
*
8V9L|1|A|U|487
8V9L|1|A|G|488
8V9L|1|A|A|489
8V9L|1|A|A|490
8V9L|1|A|U|491
8V9L|1|A|C|492
8V9L|1|A|U|493
8V9L|1|A|G|494
*
8V9L|1|A|U|509
8V9L|1|A|A|510
8V9L|1|A|A|511
8V9L|1|A|G|512

Current chains

Chain A

23S Ribosomal RNA

Nearby chains

Chain H

50S ribosomal protein L9

Chain Z

Large ribosomal subunit protein bL28