J5_8V9L_005

3D structure

PDB id

8V9L (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the Mycobacterium smegmatis 70S ribosome in complex with hibernation factor Msmeg1130 (Balon) and MsmegEF-Tu(GDP) (Composite structure 6)

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

CGAG*CGCAG*CGAG*CGUAUC*GUGUAG

Length

25 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8V9L|1|A|C|694
8V9L|1|A|G|695
8V9L|1|A|A|696
8V9L|1|A|G|697
*
8V9L|1|A|C|718
8V9L|1|A|G|719
8V9L|1|A|C|720
8V9L|1|A|A|721
8V9L|1|A|G|722
*
8V9L|1|A|C|729
8V9L|1|A|G|730
8V9L|1|A|A|731
8V9L|1|A|G|732
*
8V9L|1|A|C|744
8V9L|1|A|G|745
8V9L|1|A|U|746
8V9L|1|A|A|747
8V9L|1|A|U|748
8V9L|1|A|C|749
*
8V9L|1|A|G|766
8V9L|1|A|U|767
8V9L|1|A|G|768
8V9L|1|A|U|769
8V9L|1|A|A|770
8V9L|1|A|G|771

Current chains

Chain A

23S Ribosomal RNA

Nearby chains

Chain 7

50S ribosomal protein L35

Chain E

Large ribosomal subunit protein uL4

Chain N

50S ribosomal protein L15