J5_8VIO_007
3D structure
- PDB id
- 8VIO (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of Mycobacterium smegmatis HflX bound to a 70S ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.26 Å
Loop
- Sequence
- AAAAGACC*GGAUAACA*UCGAUGUC*GGUUUAG*CGGUCU
- Length
- 37 nucleotides
- Bulged bases
- 8VIO|1|A|A|2286, 8VIO|1|A|A|2672, 8VIO|1|A|U|2833
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
8VIO|1|A|A|2281
8VIO|1|A|A|2282
8VIO|1|A|A|2283
8VIO|1|A|A|2284
8VIO|1|A|G|2285
8VIO|1|A|A|2286
8VIO|1|A|C|2287
8VIO|1|A|C|2288
*
8VIO|1|A|G|2670
8VIO|1|A|G|2671
8VIO|1|A|A|2672
8VIO|1|A|U|2673
8VIO|1|A|A|2674
8VIO|1|A|A|2675
8VIO|1|A|C|2676
8VIO|1|A|A|2677
*
8VIO|1|A|U|2724
8VIO|1|A|C|2725
8VIO|1|A|G|2726
8VIO|1|A|A|2727
8VIO|1|A|U|2728
8VIO|1|A|G|2729
8VIO|1|A|U|2730
8VIO|1|A|C|2731
*
8VIO|1|A|G|2806
8VIO|1|A|G|2807
8VIO|1|A|U|2808
8VIO|1|A|U|2809
8VIO|1|A|U|2810
8VIO|1|A|A|2811
8VIO|1|A|G|2812
*
8VIO|1|A|C|2830
8VIO|1|A|G|2831
8VIO|1|A|G|2832
8VIO|1|A|U|2833
8VIO|1|A|C|2834
8VIO|1|A|U|2835
Current chains
- Chain A
- 23S ribosomal RNA
Nearby chains
- Chain 4
- GTPase HflX
- Chain C
- 50S ribosomal protein L2
- Chain D
- 50S ribosomal protein L3
- Chain E
- 50S Ribosomal Protein L4
- Chain M
- 50S ribosomal protein L15
- Chain N
- Large ribosomal subunit protein uL16
- Chain T
- 50S Ribosomal Protein L22
- Chain b
- 50S ribosomal protein L32
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