J5_8VK0_002
3D structure
- PDB id
- 8VK0 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of Mycobacterium smegmatis 50S ribosomal subunit bound to HflX:50S-HflX-A
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.14 Å
Loop
- Sequence
- CUAAAC*GGGUUGUG*CGAGUAG*UGAAUCUG*UAAG
- Length
- 33 nucleotides
- Bulged bases
- 8VK0|1|A|U|318, 8VK0|1|A|U|493
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
8VK0|1|A|C|269
8VK0|1|A|U|270
8VK0|1|A|A|271
8VK0|1|A|A|272
8VK0|1|A|A|273
8VK0|1|A|C|274
*
8VK0|1|A|G|312
8VK0|1|A|G|313
8VK0|1|A|G|314
8VK0|1|A|U|315
8VK0|1|A|U|316
8VK0|1|A|G|317
8VK0|1|A|U|318
8VK0|1|A|G|319
*
8VK0|1|A|C|457
8VK0|1|A|G|458
8VK0|1|A|A|459
8VK0|1|A|G|460
8VK0|1|A|U|461
8VK0|1|A|A|462
8VK0|1|A|G|463
*
8VK0|1|A|U|487
8VK0|1|A|G|488
8VK0|1|A|A|489
8VK0|1|A|A|490
8VK0|1|A|U|491
8VK0|1|A|C|492
8VK0|1|A|U|493
8VK0|1|A|G|494
*
8VK0|1|A|U|509
8VK0|1|A|A|510
8VK0|1|A|A|511
8VK0|1|A|G|512
Current chains
- Chain A
- 23S ribosomal RNA
Nearby chains
- Chain H
- 50S ribosomal protein L9
- Chain Y
- 50S Ribosomal Protein L28
Coloring options: