J5_8VKI_007

3D structure

PDB id

8VKI (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of Mycobacterium smegmatis 50S ribosomal subunit bound to HflX:50S-HflX-C

Experimental method

ELECTRON MICROSCOPY

Resolution

2.96 Å

Loop

Sequence

AAAAGACC*GGAUAACA*UCGAUGU*GUUUAG*CGGUCU

Length

35 nucleotides

Bulged bases

8VKI|1|A|A|2672, 8VKI|1|A|U|2673, 8VKI|1|A|U|2809, 8VKI|1|A|U|2833

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8VKI|1|A|A|2281
8VKI|1|A|A|2282
8VKI|1|A|A|2283
8VKI|1|A|A|2284
8VKI|1|A|G|2285
8VKI|1|A|A|2286
8VKI|1|A|C|2287
8VKI|1|A|C|2288
*
8VKI|1|A|G|2670
8VKI|1|A|G|2671
8VKI|1|A|A|2672
8VKI|1|A|U|2673
8VKI|1|A|A|2674
8VKI|1|A|A|2675
8VKI|1|A|C|2676
8VKI|1|A|A|2677
*
8VKI|1|A|U|2724
8VKI|1|A|C|2725
8VKI|1|A|G|2726
8VKI|1|A|A|2727
8VKI|1|A|U|2728
8VKI|1|A|G|2729
8VKI|1|A|U|2730
*
8VKI|1|A|G|2807
8VKI|1|A|U|2808
8VKI|1|A|U|2809
8VKI|1|A|U|2810
8VKI|1|A|A|2811
8VKI|1|A|G|2812
*
8VKI|1|A|C|2830
8VKI|1|A|G|2831
8VKI|1|A|G|2832
8VKI|1|A|U|2833
8VKI|1|A|C|2834
8VKI|1|A|U|2835

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain C

50S ribosomal protein L2

Chain D

50S ribosomal protein L3

Chain E

50S Ribosomal Protein L4

Chain M

50S ribosomal protein L15

Chain N

Large ribosomal subunit protein uL16

Chain T

50S Ribosomal Protein L22

Chain b

50S ribosomal protein L32