J5_8VKW_005

3D structure

PDB id

8VKW (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of Mycobacterium smegmatis 50S ribosomal subunit bound to delNTE-HflX

Experimental method

ELECTRON MICROSCOPY

Resolution

3.44 Å

Loop

Sequence

CGAG*CGCAG*CGAG*CGUAUC*GUGUAG

Length

25 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8VKW|1|A|C|694
8VKW|1|A|G|695
8VKW|1|A|A|696
8VKW|1|A|G|697
*
8VKW|1|A|C|718
8VKW|1|A|G|719
8VKW|1|A|C|720
8VKW|1|A|A|721
8VKW|1|A|G|722
*
8VKW|1|A|C|729
8VKW|1|A|G|730
8VKW|1|A|A|731
8VKW|1|A|G|732
*
8VKW|1|A|C|744
8VKW|1|A|G|745
8VKW|1|A|U|746
8VKW|1|A|A|747
8VKW|1|A|U|748
8VKW|1|A|C|749
*
8VKW|1|A|G|766
8VKW|1|A|U|767
8VKW|1|A|G|768
8VKW|1|A|U|769
8VKW|1|A|A|770
8VKW|1|A|G|771

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain E

50S Ribosomal Protein L4

Chain M

50S ribosomal protein L15

Chain e

50S ribosomal protein L35