J5_8VL1_003

3D structure

PDB id

8VL1 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Escherichia coli transcription-translation loosely coupled complex (TTC-LC) containing mRNA with a 36 nt long spacer, ops signal, RfaH, NusA, and fMet-tRNAs in E-site and P-site

Experimental method

ELECTRON MICROSCOPY

Resolution

5.3 Å

Loop

Sequence

CAAG*CGGACGGG*CAC*GAC*GGCAG

Length

23 nucleotides

Bulged bases

8VL1|1|D|A|109, 8VL1|1|D|C|352

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8VL1|1|D|C|58
8VL1|1|D|A|59
8VL1|1|D|A|60
8VL1|1|D|G|61
*
8VL1|1|D|C|106
8VL1|1|D|G|107
8VL1|1|D|G|108
8VL1|1|D|A|109
8VL1|1|D|C|110
8VL1|1|D|G|111
8VL1|1|D|G|112
8VL1|1|D|G|113
*
8VL1|1|D|C|314
8VL1|1|D|A|315
8VL1|1|D|C|316
*
8VL1|1|D|G|337
8VL1|1|D|A|338
8VL1|1|D|C|339
*
8VL1|1|D|G|350
8VL1|1|D|G|351
8VL1|1|D|C|352
8VL1|1|D|A|353
8VL1|1|D|G|354

Current chains

Chain D

16S rRNA

Nearby chains

Chain E

30S ribosomal protein S20

Chain U

30S ribosomal protein S16

Chain t

50S ribosomal protein L14