J5_8VL1_007

3D structure

PDB id

8VL1 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Escherichia coli transcription-translation loosely coupled complex (TTC-LC) containing mRNA with a 36 nt long spacer, ops signal, RfaH, NusA, and fMet-tRNAs in E-site and P-site

Experimental method

ELECTRON MICROSCOPY

Resolution

5.3 Å

Loop

Sequence

GCAAAAUGG*CG*UC*GAUACCAGC*GGC

Length

25 nucleotides

Bulged bases

8VL1|1|a|U|1758, 8VL1|1|a|G|1763

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8VL1|1|a|G|1674
8VL1|1|a|C|1675
8VL1|1|a|A|1676
8VL1|1|a|A|1677
8VL1|1|a|A|1678
8VL1|1|a|A|1679
8VL1|1|a|U|1680
8VL1|1|a|G|1681
8VL1|1|a|G|1682
*
8VL1|1|a|C|1706
8VL1|1|a|G|1707
*
8VL1|1|a|U|1751
8VL1|1|a|C|1752
*
8VL1|1|a|G|1756
8VL1|1|a|A|1757
8VL1|1|a|U|1758
8VL1|1|a|A|1759
8VL1|1|a|C|1760
8VL1|1|a|C|1761
8VL1|1|a|A|1762
8VL1|1|a|G|1763
8VL1|1|a|C|1764
*
8VL1|1|a|G|1988
8VL1|1|a|G|1989
8VL1|1|a|C|1990

Current chains

Chain a

23S rRNA

Nearby chains

Chain j

50S ribosomal protein L3

Chain t

50S ribosomal protein L14

Chain y

50S ribosomal protein L19